PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00051072-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 206aa    MW: 23336.7 Da    PI: 9.6107
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00051072-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-172569147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      rg++++eEdel+++++  lG++ W++Ia+++  gRt++++k++w+++
  PSME_00051072-RA 25 RGNFSEEEDELIIKLHSILGNK-WSLIASRLT-GRTDNEIKNYWNTH 69
                      89********************.********9.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.391119IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.3E-12532IPR009057Homeodomain-like
SuperFamilySSF466892.22E-22679IPR009057Homeodomain-like
PROSITE profilePS5129427.7052074IPR017930Myb domain
SMARTSM007173.1E-172472IPR001005SANT/Myb domain
PfamPF002494.1E-162569IPR001005SANT/Myb domain
CDDcd001674.60E-132770No hitNo description
Gene3DG3DSA:1.10.10.602.9E-233371IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRRLQRCGKS CRLRWINYLR PDLKRGNFSE EEDELIIKLH SILGNKWSLI ASRLTGRTDN  60
EIKNYWNTHI KRKLLKRGMD PYTHVPIVAD HGSFGFSTEN RVLPKRRLKP SEVLTDFFQK  120
QTPGISSEPK IISRSDDQAD DADVNLDLSI TLPSLRLSQI QGASSSSKEL SSGIRPSNKC  180
IQQDHKREIC CHIGLQTVGG SCCSGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2267440108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826645.12e-53PREDICTED: myb-related protein 308
SwissprotQ9SZP17e-49MYB4_ARATH; Transcription repressor MYB4
TrEMBLC0JTD81e-60C0JTD8_PINTA; R2R3-MYB transcription factor MYB10 (Fragment)
STRINGOB09G24400.15e-51(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-49myb domain protein 4